Structure-based design of 7-carbamate analogs of geldanamycin

Bioorg Med Chem Lett. 2005 Nov 15;15(22):5016-21. doi: 10.1016/j.bmcl.2005.08.013.

Abstract

The 7-carbamate groups of geldanamycin and its 17-(2-dimethylaminoethyl)amino-17-demethoxy derivative (17-DMAG) bind the N-terminal domain of Hsp90 by establishing a network of hydrogen bonds which involve four buried water molecules. In this study, a structure-based approach was used to investigate the effects of displacing some of these waters by modification of the 7-carbamate. A general loss of binding to human Hsp90 was observed, except for replacement of the carbamate with a hydroxamate group which gave an analog with weak activity. Modeling of Hsp90-ligand interactions suggested that the hydroxamate was not able to displace the buried water molecules, while bulkier substituents able to do so proved inactive.

MeSH terms

  • Benzoquinones
  • Binding Sites
  • Carbamates / chemical synthesis*
  • Carbamates / chemistry*
  • Carbamates / metabolism
  • Drug Design*
  • HSP90 Heat-Shock Proteins / chemistry
  • HSP90 Heat-Shock Proteins / metabolism
  • Hydrogen Bonding
  • Lactams, Macrocyclic
  • Ligands
  • Molecular Structure
  • Quinones / chemistry*
  • Structure-Activity Relationship

Substances

  • Benzoquinones
  • Carbamates
  • HSP90 Heat-Shock Proteins
  • Lactams, Macrocyclic
  • Ligands
  • Quinones
  • geldanamycin